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SRX24534802: GSM8263685: Drosophila testes, 72h PHS, total lysate, Replicate 2; Drosophila melanogaster; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 68.5M spots, 10.3G bases, 4.4Gb downloads

External Id: GSM8263685_r1
Submitted by: Margaret Fuller, Developmental Biology, Stanford University
Study: Developmentally regulated alternate 3' end cleavage of nascent transcripts controls dynamic changes in protein expression in an adult stem cell lineage
show Abstracthide Abstract
To determine the extent of alternative 3' end cleavage during Drosophila spermatogenesis, we performed 3' end sequencing of Drosophila testes from flies at different time points post heat shock (pHS) that were mutant for bam and also had a heat shock inducible transgene expressing Bam. We then performed Polysome profiling of testes at 24, 48 and 72 hours PHS and created 3' end sequencing libraries from the free, 40S, 60s, 80S, 2-3 ribosomes, and 4+ ribosomes fractions for each dataset Overall design: 3' end sequencing of testes from flies (genotype: bam-/-; hsBam) 0, 16, 24, 32, 48, 72 hours PHS and 3' end sequencing of Polysome Fractions (free, 40S, 60S, 80S, 2-3ribosomes, 4+ ribosomes) of testes from flies 24, 48 and 72 hours PHS
Sample: Drosophila testes, 72h PHS, total lysate, Replicate 2
SAMN41381649 • SRS21280484 • All experiments • All runs
Library:
Name: GSM8263685
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: For Polysome profiling, RNA was isolated by acid phenol-chloroform extraction and fractions were combined based on the absorbance profiles at A260 nm to create 6 groups: free, 40S, 60S, 80S, 2-3 ribosomes and 4+ ribosomes RNA libraries for RNA-seq were prepared using QuantSeq 3′ mRNA-Seq Library Prep Kit FWD for Illumina (Lexogen) following manufacturer's protocols.
Runs: 1 run, 68.5M spots, 10.3G bases, 4.4Gb
Run# of Spots# of BasesSizePublished
SRR2900774968,508,81910.3G4.4Gb2024-05-14

ID:
32852647

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